############# Data Transfer ############# Data transfer ============= Data acquired on the scanner are automatically sent to the neighboring workstation. To transfer your data to your local lab server, go to the neighboring workstation and run ``cfmricp``. This will gather all of your scan series, any physio files collected during your session, and also include a ``cfmricp_log.txt`` file. Scan series will be organized in order of acquisition. Physio files can be found under the ``physio/`` subdirectory. Please contact Conan Chen or Aaron Jacobson for any questions about data transfer. cfmricp example =============== The script ``cfmricp`` will list out datasets, prompt for your choices of dataset to transfer, server, username, and folder name on your destination server. Below, we entered blank (defaults to the last listed dataset), ``servername``, ``user``, and ``20220301_Subject00A_Session1``. The dataset is transferred to ``user@servername:~/data/20220301_Subject00A_Session1``. .. code-block:: bash user@workstation: cfmricp ... 20220228__birnMon_20220228_adj__30000022022517415364600000037/ 20220301__birnTues_20220301_adj__30000022022517415364600000040/ 20220301__Subject00A_MRI1__30000022022517415364600000043/ Enter the dataset you want to transfer (enter blank for last listed dataset): Enter the server you want to transfer to: servername Enter your username on the server: user Enter the folder under ~/data you want to transfer into (if folder does not exist, it will be created): 20220301_NeuromelaninScan Transferring dataset: 20220301__Subject00A_MRI1__30000022022517415364600000043/ Transferring into: user@servername:~/data/20220301_Subject00A_Session1 Starting transfer... No physio files detected. If you expected physio files, please contact Conan Chen or Aaron Jacobson for assistance. user@servername's password: sending incremental file list ./ cfmricp_log.txt 1,435 100% 0.00kB/s 0:00:00 (xfr#1, to-chk=962/964) 0001_Localizer/ 0001_Localizer/MR.1.3.12.2.1107.5.2.43.166239.2022030115222828073679945 260,354 100% 5.64MB/s 0:00:00 (xfr#2, to-chk=950/964) ... 0101_1/MR.1.3.12.2.1107.5.2.43.166239.30000022022701404093400001904 145,032 100% 222.00kB/s 0:00:00 (xfr#952, to-chk=0/964) sent 317,393,852 bytes received 18,199 bytes 27,601,047.91 bytes/sec total size is 317,253,969 speedup is 1.00 Transfer via cfmricp complete. In the destination location ``user@servername:~/data/20220301_Subject00A_Session1``, the files are organized into folders corresponding to each scan. Each folder contains the DICOM files from that scan. The folder ``0099_PhoenixZIPReport`` can typically be ignored - these are special DICOMs used to recreate protocols on scanners, but do not containing imaging data. The ``physio`` subfolder contains any physio files that were acquired during the session. .. code-block:: bash user@servername: ls -1 0001_Localizer 0002_t1_mprage_sag_p2_iso 0003_t2_axial_flair 0004_ABCD_fMRI_rest 0005_ABCD_fMRI_rest_PMU 0006_ABCD_fMRI_DistortionMap_PA 0007_ABCD_fMRI_DistortionMap_AP 0008_ABCD_fMRI_rest 0009_ABCD_fMRI_rest_PMU 0010_ABCD_dMRI_DistortionMap_PA 0011_ABCD_dMRI_DistortionMap_AP 0012_ABCD_dMRI 0013_PhoenixZIPReport cfmricp_log.txt physio user@servername: user@servername: ls -1 physio/ Pilot1_03012022.puls Pilot1_03012022.resp An example log is shown below. .. code-block:: bash ***************************************************** Data Transfer (cfmricp) Log ***************************************************** Notes: If you request transfer (can say no), you need: 1. server name (cfmri, fmriserver, fmrimems, etc) 2. user id on the server 3. destination folder name under ~/data/ If the folder already exists under ~/data/ the new files will be appended to the folder. Otherwise, the new directory will be created. ***************************************************** Session ***************************************************** Initiation Date: 20220301 Protocol: R21_BOLD_DTI Start time: 15:12:23 End time: 15:51:19 ***************************************************** Scan Directories ***************************************************** 0001_Localizer 0002_t1_mprage_sag_p2_iso 0003_t2_axial_flair 0004_ABCD_fMRI_rest 0005_ABCD_fMRI_rest_PMU 0006_ABCD_fMRI_DistortionMap_PA 0007_ABCD_fMRI_DistortionMap_AP 0008_ABCD_fMRI_rest 0009_ABCD_fMRI_rest_PMU 0010_ABCD_dMRI_DistortionMap_PA 0011_ABCD_dMRI_DistortionMap_AP 0012_ABCD_dMRI 0013_PhoenixZIPReport ***************************************************** Physios ***************************************************** Pilot1_03012022.puls Pilot1_03012022.resp